TY  - JOUR
AU  - Bozzi, Riccardo
AU  - Skrlep, M.
AU  - Lenoir, Herveline
AU  - Lebret, Benedicte
AU  - Garcia Gasco, J. M.
AU  - Petig, M.
AU  - Charneca, Rui
AU  - Paixim, H.
AU  - Karolyi, Danijel
AU  - Radović, Čedomir
AU  - Gallo, Maurizio
AU  - Geraci, Claudia
AU  - Usai, G.
AU  - Quintanilla, R.
AU  - Araujo, José Pedro
AU  - Razmaite, V.
AU  - Gvozdanović, Kristina
PY  - 2018
UR  - https://www.uco.es/ucopress/az/index.php/az/article/view/3560
UR  - http://epserbia.open.ac.rs/123456789/191
UR  - http://r.istocar.bg.ac.rs/handle/123456789/577
UR  - https://prodinra.inra.fr/record/430277
AB  - The paper reports the results of a survey on the demographic and phenotypic characterization of 20 European local pig breeds involved in the H2020 TREASURE project including information on: demographic parameters, main morphological features, reproductive information, additional information collected at herd-level (i.e. temperament, holding, mating practices), origins and development of the breeds. Almost all the breeds (18 out of 20) possess a herd book even if the starting year is highly variable (from 1980 to 2006). Number of breeding females ranged from 24 (Moravka) to over 200,000 heads (Ibérico). Male/female ratio varied greatly with the highest values for the Italian breeds probably due to the different policy of animal recording. Almost all the breeds undergo a conservation program whereas really few are interested by other conservation techniques and for less than five breeds data related to effective number and inbreeding coefficient are easily available. Average values for teat number, litter size and weaned piglets are 12, 8 and 6 respectively with a great potential for their improvement. The depicted scenario is highly diversified and the data collected represent the starting point for the achievement of a collective trademark under the umbrella of the TREASURE project.
PB  - Cordoba : UCOPress. Cordoba University Press
T2  - Archivos de Zootecnia
T1  - Survey of demographic and phenotypic data of local pig breeds of TREASURE project
VL  - 67
IS  - Supplement
SP  - 1
EP  - 4
DO  - 10.21071/az.v67iSupplement.3560
ER  - 

@article{
author = "Bozzi, Riccardo and Skrlep, M. and Lenoir, Herveline and Lebret, Benedicte and Garcia Gasco, J. M. and Petig, M. and Charneca, Rui and Paixim, H. and Karolyi, Danijel and Radović, Čedomir and Gallo, Maurizio and Geraci, Claudia and Usai, G. and Quintanilla, R. and Araujo, José Pedro and Razmaite, V. and Gvozdanović, Kristina",
year = "2018",
abstract = "The paper reports the results of a survey on the demographic and phenotypic characterization of 20 European local pig breeds involved in the H2020 TREASURE project including information on: demographic parameters, main morphological features, reproductive information, additional information collected at herd-level (i.e. temperament, holding, mating practices), origins and development of the breeds. Almost all the breeds (18 out of 20) possess a herd book even if the starting year is highly variable (from 1980 to 2006). Number of breeding females ranged from 24 (Moravka) to over 200,000 heads (Ibérico). Male/female ratio varied greatly with the highest values for the Italian breeds probably due to the different policy of animal recording. Almost all the breeds undergo a conservation program whereas really few are interested by other conservation techniques and for less than five breeds data related to effective number and inbreeding coefficient are easily available. Average values for teat number, litter size and weaned piglets are 12, 8 and 6 respectively with a great potential for their improvement. The depicted scenario is highly diversified and the data collected represent the starting point for the achievement of a collective trademark under the umbrella of the TREASURE project.",
publisher = "Cordoba : UCOPress. Cordoba University Press",
journal = "Archivos de Zootecnia",
title = "Survey of demographic and phenotypic data of local pig breeds of TREASURE project",
volume = "67",
number = "Supplement",
pages = "1-4",
doi = "10.21071/az.v67iSupplement.3560"
}

Bozzi, R., Skrlep, M., Lenoir, H., Lebret, B., Garcia Gasco, J. M., Petig, M., Charneca, R., Paixim, H., Karolyi, D., Radović, Č., Gallo, M., Geraci, C., Usai, G., Quintanilla, R., Araujo, J. P., Razmaite, V.,& Gvozdanović, K.. (2018). Survey of demographic and phenotypic data of local pig breeds of TREASURE project. in Archivos de Zootecnia
Cordoba : UCOPress. Cordoba University Press., 67(Supplement), 1-4.
https://doi.org/10.21071/az.v67iSupplement.3560

Bozzi R, Skrlep M, Lenoir H, Lebret B, Garcia Gasco JM, Petig M, Charneca R, Paixim H, Karolyi D, Radović Č, Gallo M, Geraci C, Usai G, Quintanilla R, Araujo JP, Razmaite V, Gvozdanović K. Survey of demographic and phenotypic data of local pig breeds of TREASURE project. in Archivos de Zootecnia. 2018;67(Supplement):1-4.
doi:10.21071/az.v67iSupplement.3560 .

Bozzi, Riccardo, Skrlep, M., Lenoir, Herveline, Lebret, Benedicte, Garcia Gasco, J. M., Petig, M., Charneca, Rui, Paixim, H., Karolyi, Danijel, Radović, Čedomir, Gallo, Maurizio, Geraci, Claudia, Usai, G., Quintanilla, R., Araujo, José Pedro, Razmaite, V., Gvozdanović, Kristina, "Survey of demographic and phenotypic data of local pig breeds of TREASURE project" in Archivos de Zootecnia, 67, no. Supplement (2018):1-4,
https://doi.org/10.21071/az.v67iSupplement.3560 . .

TY  - JOUR
AU  - Muñoz, M.
AU  - Bozzi, Riccardo
AU  - García, F.
AU  - Nuñez, Yolanda
AU  - Geraci, Claudia
AU  - Crovetti, Alessandro
AU  - Garcia Casco, Juan Maria
AU  - Alves, Estefânia
AU  - Škrlep, M.
AU  - Charneca, Rui
AU  - Martins, J.M.
AU  - Quintanilla, R.
AU  - Tibau, J.
AU  - Kušec, Goran
AU  - Djurkin-Kušec, I.
AU  - Mercat, Marie-José
AU  - Riquet, J.
AU  - Estellé, J.
AU  - Zimmer, C.
AU  - Razmaite, V.
AU  - Araujo, José Pedro
AU  - Radović, Čedomir
AU  - Savić, Radomir
AU  - Karolyi, Danijel
AU  - Gallo, Maurizio
AU  - Čandek-Potokar, Marjeta
AU  - Fontanesi, Luca
AU  - Fernández, A.I.
AU  - Óvilo, C.
PY  - 2018
UR  - http://r.istocar.bg.ac.rs/handle/123456789/551
UR  - http://hdl.handle.net/20.500.12327/251
AB  - The aim of this work was to analyse the distribution of causal and candidate mutations associated to relevant productive traits in twenty local European pig breeds. Also, the potential of the SNP panel employed for elucidating the genetic structure and relationships among breeds was evaluated. Most relevant genes and mutations associated with pig morphological, productive, meat quality, reproductive and disease resistance traits were prioritized and analyzed in a maximum of 47 blood samples from each of the breeds (Alentejana, Apulo-Calabrese, Basque, Bísara, Majorcan Black, Black Slavonian (Crna slavonska), Casertana, Cinta Senese, Gascon, Iberian, Krškopolje (Krškopoljski), Lithuanian indigenous wattle, Lithuanian White Old Type, Mora Romagnola, Moravka, Nero Siciliano, Sarda, Schwäbisch-Hällisches Schwein (Swabian Hall pig), Swallow-Bellied Mangalitsa and Turopolje). We successfully analyzed allelic variation in 39 polymorphisms, located in 33 candidate genes. Results provide relevant information regarding genetic diversity and segregation of SNPs associated to production and quality traits. Coat color and morphological trait-genes that show low level of segregation, and fixed SNPs may be useful for traceability. On the other hand, we detected SNPs which may be useful for association studies as well as breeding programs. For instance, we observed predominance of alleles that might be unfavorable for disease resistance and boar taint in most breeds and segregation of many alleles involved in meat quality, fatness and growth traits. Overall, these findings provide a detailed catalogue of segregating candidate SNPs in 20 European local pig breeds that may be useful for traceability purposes, for association studies and for breeding schemes. Population genetic analyses based on these candidate genes are able to uncover some clues regarding the hidden genetic substructure of these populations, as the extreme genetic closeness between Iberian and Alentejana breeds and an uneven admixture of the breeds studied. The results are in agreement with available knowledge regarding breed history and management, although largest panels of neutral markers should be employed to get a deeper understanding of the population's structure and relationships.
PB  - Public Library of Science (PLoS)
T2  - PloS one
T1  - Diversity across major and candidate genes in European local pig breeds
VL  - 13
IS  - 11
DO  - 10.1371/journal.pone.0207475
ER  - 

@article{
author = "Muñoz, M. and Bozzi, Riccardo and García, F. and Nuñez, Yolanda and Geraci, Claudia and Crovetti, Alessandro and Garcia Casco, Juan Maria and Alves, Estefânia and Škrlep, M. and Charneca, Rui and Martins, J.M. and Quintanilla, R. and Tibau, J. and Kušec, Goran and Djurkin-Kušec, I. and Mercat, Marie-José and Riquet, J. and Estellé, J. and Zimmer, C. and Razmaite, V. and Araujo, José Pedro and Radović, Čedomir and Savić, Radomir and Karolyi, Danijel and Gallo, Maurizio and Čandek-Potokar, Marjeta and Fontanesi, Luca and Fernández, A.I. and Óvilo, C.",
year = "2018",
abstract = "The aim of this work was to analyse the distribution of causal and candidate mutations associated to relevant productive traits in twenty local European pig breeds. Also, the potential of the SNP panel employed for elucidating the genetic structure and relationships among breeds was evaluated. Most relevant genes and mutations associated with pig morphological, productive, meat quality, reproductive and disease resistance traits were prioritized and analyzed in a maximum of 47 blood samples from each of the breeds (Alentejana, Apulo-Calabrese, Basque, Bísara, Majorcan Black, Black Slavonian (Crna slavonska), Casertana, Cinta Senese, Gascon, Iberian, Krškopolje (Krškopoljski), Lithuanian indigenous wattle, Lithuanian White Old Type, Mora Romagnola, Moravka, Nero Siciliano, Sarda, Schwäbisch-Hällisches Schwein (Swabian Hall pig), Swallow-Bellied Mangalitsa and Turopolje). We successfully analyzed allelic variation in 39 polymorphisms, located in 33 candidate genes. Results provide relevant information regarding genetic diversity and segregation of SNPs associated to production and quality traits. Coat color and morphological trait-genes that show low level of segregation, and fixed SNPs may be useful for traceability. On the other hand, we detected SNPs which may be useful for association studies as well as breeding programs. For instance, we observed predominance of alleles that might be unfavorable for disease resistance and boar taint in most breeds and segregation of many alleles involved in meat quality, fatness and growth traits. Overall, these findings provide a detailed catalogue of segregating candidate SNPs in 20 European local pig breeds that may be useful for traceability purposes, for association studies and for breeding schemes. Population genetic analyses based on these candidate genes are able to uncover some clues regarding the hidden genetic substructure of these populations, as the extreme genetic closeness between Iberian and Alentejana breeds and an uneven admixture of the breeds studied. The results are in agreement with available knowledge regarding breed history and management, although largest panels of neutral markers should be employed to get a deeper understanding of the population's structure and relationships.",
publisher = "Public Library of Science (PLoS)",
journal = "PloS one",
title = "Diversity across major and candidate genes in European local pig breeds",
volume = "13",
number = "11",
doi = "10.1371/journal.pone.0207475"
}

Muñoz, M., Bozzi, R., García, F., Nuñez, Y., Geraci, C., Crovetti, A., Garcia Casco, J. M., Alves, E., Škrlep, M., Charneca, R., Martins, J.M., Quintanilla, R., Tibau, J., Kušec, G., Djurkin-Kušec, I., Mercat, M., Riquet, J., Estellé, J., Zimmer, C., Razmaite, V., Araujo, J. P., Radović, Č., Savić, R., Karolyi, D., Gallo, M., Čandek-Potokar, M., Fontanesi, L., Fernández, A.I.,& Óvilo, C.. (2018). Diversity across major and candidate genes in European local pig breeds. in PloS one
Public Library of Science (PLoS)., 13(11).
https://doi.org/10.1371/journal.pone.0207475

Muñoz M, Bozzi R, García F, Nuñez Y, Geraci C, Crovetti A, Garcia Casco JM, Alves E, Škrlep M, Charneca R, Martins J, Quintanilla R, Tibau J, Kušec G, Djurkin-Kušec I, Mercat M, Riquet J, Estellé J, Zimmer C, Razmaite V, Araujo JP, Radović Č, Savić R, Karolyi D, Gallo M, Čandek-Potokar M, Fontanesi L, Fernández A, Óvilo C. Diversity across major and candidate genes in European local pig breeds. in PloS one. 2018;13(11).
doi:10.1371/journal.pone.0207475 .

Muñoz, M., Bozzi, Riccardo, García, F., Nuñez, Yolanda, Geraci, Claudia, Crovetti, Alessandro, Garcia Casco, Juan Maria, Alves, Estefânia, Škrlep, M., Charneca, Rui, Martins, J.M., Quintanilla, R., Tibau, J., Kušec, Goran, Djurkin-Kušec, I., Mercat, Marie-José, Riquet, J., Estellé, J., Zimmer, C., Razmaite, V., Araujo, José Pedro, Radović, Čedomir, Savić, Radomir, Karolyi, Danijel, Gallo, Maurizio, Čandek-Potokar, Marjeta, Fontanesi, Luca, Fernández, A.I., Óvilo, C., "Diversity across major and candidate genes in European local pig breeds" in PloS one, 13, no. 11 (2018),
https://doi.org/10.1371/journal.pone.0207475 . .