Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed
2016
Authors
Trukhachev, VladimirBelyaev, Valery
Kvochko, Andrey
Kulichenko, Alexander
Kovalev, Dmitry
Pisarenko, Sergey
Volynkina, Anna
Selionova, Marina
Aybazov, Magomet M.
Shumaenko, Svetlana
Omarov, Arslan
Mamontova, Tatyana
Yatsyk, Olesya
Krivoruchko, Alexander
Petrović, Milan P.
Pantelić, Vlada
Caro Petrović, Violeta
Article (Published version)
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Show full item recordAbstract
One of the new promising candidate genes defining productive qualities of sheep is MEF2B. Protein from the MEF2 group encoded by it affects the production of myostatin and the expression of the genes responsible for the growth of skeletal muscle fibers. Thus, the knowledge of the MEF2B gene structure is important for genomic selection. We have studied the structure of the MEF2B gene at sheep of Severokavkazskaya breed bred in Russia. To detect alleles we use NimbleGen sequencing technology by Roche (USA). As a result, it was revealed 14 single nucleotide polymorphisms (SNP) at the given breed. The discovered SNPare located in not coding areas. From them 7 polymorphisms are in the area of 5' upstream gene in loci: c.-1713, c.-1319, c.-839, c.-321, c.-246, c.-161, c.-3; 6 polymorphisms are in introns, loci: c.55-51, c.258+312, c.258+380, c.259-52, c.452+95, c.452+ 103, 1 SNP is in 3' downstream gene, c.*252. Two of the identified SNPs are significantly connected with high indices of meat... productivity: c.55-51 and c.259-52. At the same time it was not possible to find out the impact on productivity of c.-1713 polymorphism. Our investigation is a base of next research of affection of different MEF2B gene alleles on meat quality and can be used to prepare PCR test-system for genomic selection.
Keywords:
genomic election / MEF2B / sequence / sheep / SNPSource:
Genetika-Belgrade, 2016, 48, 1, 97-108Publisher:
- Serbian Genetics Society, Belgrade
Funding / projects:
- Ministry of Agriculture of the Russian Federation [3119/13]
DOI: 10.2298/GENSR1601097T
ISSN: 0534-0012
WoS: 000376744800009
Scopus: 2-s2.0-84971264763
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RIStocarTY - JOUR AU - Trukhachev, Vladimir AU - Belyaev, Valery AU - Kvochko, Andrey AU - Kulichenko, Alexander AU - Kovalev, Dmitry AU - Pisarenko, Sergey AU - Volynkina, Anna AU - Selionova, Marina AU - Aybazov, Magomet M. AU - Shumaenko, Svetlana AU - Omarov, Arslan AU - Mamontova, Tatyana AU - Yatsyk, Olesya AU - Krivoruchko, Alexander AU - Petrović, Milan P. AU - Pantelić, Vlada AU - Caro Petrović, Violeta PY - 2016 UR - http://r.istocar.bg.ac.rs/handle/123456789/480 AB - One of the new promising candidate genes defining productive qualities of sheep is MEF2B. Protein from the MEF2 group encoded by it affects the production of myostatin and the expression of the genes responsible for the growth of skeletal muscle fibers. Thus, the knowledge of the MEF2B gene structure is important for genomic selection. We have studied the structure of the MEF2B gene at sheep of Severokavkazskaya breed bred in Russia. To detect alleles we use NimbleGen sequencing technology by Roche (USA). As a result, it was revealed 14 single nucleotide polymorphisms (SNP) at the given breed. The discovered SNPare located in not coding areas. From them 7 polymorphisms are in the area of 5' upstream gene in loci: c.-1713, c.-1319, c.-839, c.-321, c.-246, c.-161, c.-3; 6 polymorphisms are in introns, loci: c.55-51, c.258+312, c.258+380, c.259-52, c.452+95, c.452+ 103, 1 SNP is in 3' downstream gene, c.*252. Two of the identified SNPs are significantly connected with high indices of meat productivity: c.55-51 and c.259-52. At the same time it was not possible to find out the impact on productivity of c.-1713 polymorphism. Our investigation is a base of next research of affection of different MEF2B gene alleles on meat quality and can be used to prepare PCR test-system for genomic selection. PB - Serbian Genetics Society, Belgrade T2 - Genetika-Belgrade T1 - Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed VL - 48 IS - 1 SP - 97 EP - 108 DO - 10.2298/GENSR1601097T ER -
@article{ author = "Trukhachev, Vladimir and Belyaev, Valery and Kvochko, Andrey and Kulichenko, Alexander and Kovalev, Dmitry and Pisarenko, Sergey and Volynkina, Anna and Selionova, Marina and Aybazov, Magomet M. and Shumaenko, Svetlana and Omarov, Arslan and Mamontova, Tatyana and Yatsyk, Olesya and Krivoruchko, Alexander and Petrović, Milan P. and Pantelić, Vlada and Caro Petrović, Violeta", year = "2016", abstract = "One of the new promising candidate genes defining productive qualities of sheep is MEF2B. Protein from the MEF2 group encoded by it affects the production of myostatin and the expression of the genes responsible for the growth of skeletal muscle fibers. Thus, the knowledge of the MEF2B gene structure is important for genomic selection. We have studied the structure of the MEF2B gene at sheep of Severokavkazskaya breed bred in Russia. To detect alleles we use NimbleGen sequencing technology by Roche (USA). As a result, it was revealed 14 single nucleotide polymorphisms (SNP) at the given breed. The discovered SNPare located in not coding areas. From them 7 polymorphisms are in the area of 5' upstream gene in loci: c.-1713, c.-1319, c.-839, c.-321, c.-246, c.-161, c.-3; 6 polymorphisms are in introns, loci: c.55-51, c.258+312, c.258+380, c.259-52, c.452+95, c.452+ 103, 1 SNP is in 3' downstream gene, c.*252. Two of the identified SNPs are significantly connected with high indices of meat productivity: c.55-51 and c.259-52. At the same time it was not possible to find out the impact on productivity of c.-1713 polymorphism. Our investigation is a base of next research of affection of different MEF2B gene alleles on meat quality and can be used to prepare PCR test-system for genomic selection.", publisher = "Serbian Genetics Society, Belgrade", journal = "Genetika-Belgrade", title = "Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed", volume = "48", number = "1", pages = "97-108", doi = "10.2298/GENSR1601097T" }
Trukhachev, V., Belyaev, V., Kvochko, A., Kulichenko, A., Kovalev, D., Pisarenko, S., Volynkina, A., Selionova, M., Aybazov, M. M., Shumaenko, S., Omarov, A., Mamontova, T., Yatsyk, O., Krivoruchko, A., Petrović, M. P., Pantelić, V.,& Caro Petrović, V.. (2016). Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed. in Genetika-Belgrade Serbian Genetics Society, Belgrade., 48(1), 97-108. https://doi.org/10.2298/GENSR1601097T
Trukhachev V, Belyaev V, Kvochko A, Kulichenko A, Kovalev D, Pisarenko S, Volynkina A, Selionova M, Aybazov MM, Shumaenko S, Omarov A, Mamontova T, Yatsyk O, Krivoruchko A, Petrović MP, Pantelić V, Caro Petrović V. Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed. in Genetika-Belgrade. 2016;48(1):97-108. doi:10.2298/GENSR1601097T .
Trukhachev, Vladimir, Belyaev, Valery, Kvochko, Andrey, Kulichenko, Alexander, Kovalev, Dmitry, Pisarenko, Sergey, Volynkina, Anna, Selionova, Marina, Aybazov, Magomet M., Shumaenko, Svetlana, Omarov, Arslan, Mamontova, Tatyana, Yatsyk, Olesya, Krivoruchko, Alexander, Petrović, Milan P., Pantelić, Vlada, Caro Petrović, Violeta, "Mef2b gene snp markers of meat productivity in Severokavkazskaya sheep breed" in Genetika-Belgrade, 48, no. 1 (2016):97-108, https://doi.org/10.2298/GENSR1601097T . .