TY  - RPRT
AU  - Dadousis, Christos
AU  - Munoz, Maria
AU  - Ovilo, Cristina
AU  - Fabbri, Maria Chiara
AU  - Araujo, Jose Pedro
AU  - Bovo, Samuele
AU  - Čandek Potokar, Marjeta
AU  - Charneca, Rui
AU  - Crovetti, Alessandro
AU  - Gallo, Maurizio
AU  - Garcia-Casco, Juan Maria
AU  - Karolyi, Danijel
AU  - Kušec, Goran
AU  - Martins, Jose Manuel
AU  - Mercat, Marie-Jose
AU  - Pugliese, Carolina
AU  - Quintanilla, Raquel
AU  - Radović, Čedomir
AU  - Razmaite, Violeta
AU  - Ribani, Anisa
AU  - Raquet, Juliet
AU  - Savić, Radomir
AU  - Schiavo, Giuseppina
AU  - Škrlep, Martin
AU  - Tinarelli, Silvia
AU  - Usai, Graziano
AU  - Zimmer, Christoph
AU  - Fontanesi, Luca
AU  - Bozzi, Riccardo
PY  - 2022
UR  - http://r.istocar.bg.ac.rs/handle/123456789/819
AB  - Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain
(both at local and global scales) including the production of high-quality branded products, (ii) enrich
the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP)
chips ofer the opportunity for whole-genome comparisons among individuals and breeds. Animals
from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje;
France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana,
Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type;
Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig;
Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were
sampled and genotyped with the GeneSeek Genomic Profler (GGP) 70 K HD porcine genotyping chip.
A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~49 pigs/
breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability
via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries
found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement
PB  - Nature Portfolio
T2  - Scientifc Reports
T1  - Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data
VL  - 12
IS  - 7146
DO  - https://doi.org/10.1038/s41598-022-10698-8
ER  - 

@techreport{
author = "Dadousis, Christos and Munoz, Maria and Ovilo, Cristina and Fabbri, Maria Chiara and Araujo, Jose Pedro and Bovo, Samuele and Čandek Potokar, Marjeta and Charneca, Rui and Crovetti, Alessandro and Gallo, Maurizio and Garcia-Casco, Juan Maria and Karolyi, Danijel and Kušec, Goran and Martins, Jose Manuel and Mercat, Marie-Jose and Pugliese, Carolina and Quintanilla, Raquel and Radović, Čedomir and Razmaite, Violeta and Ribani, Anisa and Raquet, Juliet and Savić, Radomir and Schiavo, Giuseppina and Škrlep, Martin and Tinarelli, Silvia and Usai, Graziano and Zimmer, Christoph and Fontanesi, Luca and Bozzi, Riccardo",
year = "2022",
abstract = "Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain
(both at local and global scales) including the production of high-quality branded products, (ii) enrich
the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP)
chips ofer the opportunity for whole-genome comparisons among individuals and breeds. Animals
from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje;
France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana,
Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type;
Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig;
Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were
sampled and genotyped with the GeneSeek Genomic Profler (GGP) 70 K HD porcine genotyping chip.
A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~49 pigs/
breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability
via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries
found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement",
publisher = "Nature Portfolio",
journal = "Scientifc Reports",
title = "Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data",
volume = "12",
number = "7146",
doi = "https://doi.org/10.1038/s41598-022-10698-8"
}

Dadousis, C., Munoz, M., Ovilo, C., Fabbri, M. C., Araujo, J. P., Bovo, S., Čandek Potokar, M., Charneca, R., Crovetti, A., Gallo, M., Garcia-Casco, J. M., Karolyi, D., Kušec, G., Martins, J. M., Mercat, M., Pugliese, C., Quintanilla, R., Radović, Č., Razmaite, V., Ribani, A., Raquet, J., Savić, R., Schiavo, G., Škrlep, M., Tinarelli, S., Usai, G., Zimmer, C., Fontanesi, L.,& Bozzi, R.. (2022). Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data. in Scientifc Reports
Nature Portfolio., 12(7146).
https://doi.org/https://doi.org/10.1038/s41598-022-10698-8

Dadousis C, Munoz M, Ovilo C, Fabbri MC, Araujo JP, Bovo S, Čandek Potokar M, Charneca R, Crovetti A, Gallo M, Garcia-Casco JM, Karolyi D, Kušec G, Martins JM, Mercat M, Pugliese C, Quintanilla R, Radović Č, Razmaite V, Ribani A, Raquet J, Savić R, Schiavo G, Škrlep M, Tinarelli S, Usai G, Zimmer C, Fontanesi L, Bozzi R. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data. in Scientifc Reports. 2022;12(7146).
doi:https://doi.org/10.1038/s41598-022-10698-8 .

Dadousis, Christos, Munoz, Maria, Ovilo, Cristina, Fabbri, Maria Chiara, Araujo, Jose Pedro, Bovo, Samuele, Čandek Potokar, Marjeta, Charneca, Rui, Crovetti, Alessandro, Gallo, Maurizio, Garcia-Casco, Juan Maria, Karolyi, Danijel, Kušec, Goran, Martins, Jose Manuel, Mercat, Marie-Jose, Pugliese, Carolina, Quintanilla, Raquel, Radović, Čedomir, Razmaite, Violeta, Ribani, Anisa, Raquet, Juliet, Savić, Radomir, Schiavo, Giuseppina, Škrlep, Martin, Tinarelli, Silvia, Usai, Graziano, Zimmer, Christoph, Fontanesi, Luca, Bozzi, Riccardo, "Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data" in Scientifc Reports, 12, no. 7146 (2022),
https://doi.org/https://doi.org/10.1038/s41598-022-10698-8 . .

TY  - JOUR
AU  - Brossard, Ludovic
AU  - Nieto, Rosa
AU  - Charneca, Rui
AU  - Araujo, José Pedro
AU  - Pugliese, Carolina
AU  - Radović, Čedomir
AU  - Čandek-Potokar, Marjeta
PY  - 2019
UR  - http://r.istocar.bg.ac.rs/handle/123456789/644
AB  - Models such as InraPorc enable the growth of pigs to be simulated and their nutrient
requirements to be determined. However, so far, these models have not been applied to local breeds.
We used InraPorc to determine the nutrient requirements of growing pigs from local breeds (H2020
European Union project TREASURE). Data on feed composition, allowance and intake, and body
weight (BW) were obtained from literature reports or experiments conducted within the project. Data
were used in InraPorc to calibrate 16 growth and intake profiles from nine breeds (Alentejana, Basque,
Bísara, Apulo Calabrese, Cinta Senese, Iberian, Krškopolje pig, Mangalitsa, and Moravka), with one
to three profiles per breed depending on the experimental conditions or data source. On the 40–100 kg
BW range, mean protein deposition (PDm) was low for all breeds (below 116 g/d vs. over 130 g/d
in conventional breeds). The age of pigs at 40 kg BW (110 to 206 days) denoted different types of
feeding management in addition to genetic differences. The PDm and the lysine requirements were
the highest in breeds with the highest average daily gain. In all breeds, a small proportion of total
body energy retention was dedicated to protein, with the greatest proportion of energy retention in
the form of lipids. Despite some methodological limitations, this study provides initial insights into
the nutrient requirements of some local breeds.
PB  - MDPI Open Access Journals
T2  - Animals
T1  - Modelling Nutritional Requirements of Growing Pigs from Local Breeds Using InraPorc
IS  - 169
SP  - 169
DO  - doi.org/10.3390/ani9040169
ER  - 

@article{
author = "Brossard, Ludovic and Nieto, Rosa and Charneca, Rui and Araujo, José Pedro and Pugliese, Carolina and Radović, Čedomir and Čandek-Potokar, Marjeta",
year = "2019",
abstract = "Models such as InraPorc enable the growth of pigs to be simulated and their nutrient
requirements to be determined. However, so far, these models have not been applied to local breeds.
We used InraPorc to determine the nutrient requirements of growing pigs from local breeds (H2020
European Union project TREASURE). Data on feed composition, allowance and intake, and body
weight (BW) were obtained from literature reports or experiments conducted within the project. Data
were used in InraPorc to calibrate 16 growth and intake profiles from nine breeds (Alentejana, Basque,
Bísara, Apulo Calabrese, Cinta Senese, Iberian, Krškopolje pig, Mangalitsa, and Moravka), with one
to three profiles per breed depending on the experimental conditions or data source. On the 40–100 kg
BW range, mean protein deposition (PDm) was low for all breeds (below 116 g/d vs. over 130 g/d
in conventional breeds). The age of pigs at 40 kg BW (110 to 206 days) denoted different types of
feeding management in addition to genetic differences. The PDm and the lysine requirements were
the highest in breeds with the highest average daily gain. In all breeds, a small proportion of total
body energy retention was dedicated to protein, with the greatest proportion of energy retention in
the form of lipids. Despite some methodological limitations, this study provides initial insights into
the nutrient requirements of some local breeds.",
publisher = "MDPI Open Access Journals",
journal = "Animals",
title = "Modelling Nutritional Requirements of Growing Pigs from Local Breeds Using InraPorc",
number = "169",
pages = "169",
doi = "doi.org/10.3390/ani9040169"
}

Brossard, L., Nieto, R., Charneca, R., Araujo, J. P., Pugliese, C., Radović, Č.,& Čandek-Potokar, M.. (2019). Modelling Nutritional Requirements of Growing Pigs from Local Breeds Using InraPorc. in Animals
MDPI Open Access Journals.(169), 169.
https://doi.org/doi.org/10.3390/ani9040169

Brossard L, Nieto R, Charneca R, Araujo JP, Pugliese C, Radović Č, Čandek-Potokar M. Modelling Nutritional Requirements of Growing Pigs from Local Breeds Using InraPorc. in Animals. 2019;(169):169.
doi:doi.org/10.3390/ani9040169 .

Brossard, Ludovic, Nieto, Rosa, Charneca, Rui, Araujo, José Pedro, Pugliese, Carolina, Radović, Čedomir, Čandek-Potokar, Marjeta, "Modelling Nutritional Requirements of Growing Pigs from Local Breeds Using InraPorc" in Animals, no. 169 (2019):169,
https://doi.org/doi.org/10.3390/ani9040169 . .